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  1. Free, publicly-accessible full text available February 1, 2025
  2. Abstract

    Bacterial contamination of surface water is a public health concern. To quantify the efflux ofEscherichia coliinto ephemeral and intermittent streams and assess its numbers in relation to secondary body contact standards, we monitored runoff and measuredE. colinumbers from 10 experimental watersheds that differed in vegetation cover and cattle access in north‐central Oklahoma.Escherichia colinumbers were not significantly different among the watersheds, with one exception; the grazed prairie watershed (GP1) had greater numbers compared to one ungrazed prairie watershed (UP2). MedianE. colinumbers in runoff from ungrazed watersheds ranged from 260 to 1482 MPN/100 mL in comparison with grazed watersheds that ranged from 320 to 8878 MPN/100 mL. In the GP1 watershed, higher cattle stocking rates during pre‐ and post‐calving (February–May) resulted in significantly greater bacterial numbers and event loading compared to periods with lower stocking rates. The lack of significance among watersheds is likely due to the grazed sites being rotationally (and lightly) grazed, data variability, and wildlife contributions. To address wildlife sources, we used camera trap data to assess the usage in the watersheds; however, the average number of animals in a 24‐h period did not correlate with observed medianE. colinumbers. Because of its impacts onE. colinumbers in water, grazing management (stocking rate, rotation, and timing) should be considered for improving water quality in streams and reservoirs.

     
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    Free, publicly-accessible full text available January 1, 2025
  3. Abstract

    Organic electrochemical transistors (OECTs) are ideal devices for translating biological signals into electrical readouts and have applications in bioelectronics, biosensing, and neuromorphic computing. Despite their potential, developing programmable and modular methods for living systems to interface with OECTs has proven challenging. Here we describe hybrid OECTs containing the model electroactive bacteriumShewanella oneidensisthat enable the transduction of biological computations to electrical responses. Specifically, we fabricated planar p-type OECTs and demonstrated that channel de-doping is driven by extracellular electron transfer (EET) fromS. oneidensis. Leveraging this mechanistic understanding and our ability to control EET flux via transcriptional regulation, we used plasmid-based Boolean logic gates to translate biological computation into current changes within the OECT. Finally, we demonstrated EET-driven changes to OECT synaptic plasticity. This work enables fundamental EET studies and OECT-based biosensing and biocomputing systems with genetically controllable and modular design elements.

     
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  4. Microwave loss in superconducting TiN films is attributed to two-level systems in various interfaces arising in part from oxidation and microfabrication-induced damage. Atomic layer etching (ALE) is an emerging subtractive fabrication method which is capable of etching with angstrom-scale etch depth control and potentially less damage. However, while ALE processes for TiN have been reported, they either employ HF vapor, incurring practical complications, or the etch rate lacks the desired control. Furthermore, the superconducting characteristics of the etched films have not been characterized. Here, we report an isotropic plasma-thermal TiN ALE process consisting of sequential exposures to molecular oxygen and an SF6/H2 plasma. For certain ratios of SF6:H2 flow rates, we observe selective etching of TiO2 over TiN, enabling self-limiting etching within a cycle. Etch rates were measured to vary from 1.1 Å/cycle at 150°C to 3.2 Å/cycle at 350°C using ex situ ellipsometry. We demonstrate that the superconducting critical temperature of the etched film does not decrease beyond that expected from the decrease in film thickness, highlighting the low-damage nature of the process. These findings have relevance for applications of TiN in microwave kinetic inductance detectors and superconducting qubits. 
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    Free, publicly-accessible full text available September 26, 2024
  5. Twisted interfaces between stacked van der Waals (vdW) cuprate crystals present a platform for engineering superconducting order parameters by adjusting stacking angles. Using a cryogenic assembly technique, we construct twisted vdW Josephson junctions (JJs) at atomically sharp interfaces between Bi2Sr2CaCu2O8+xcrystals, with quality approaching the limit set by intrinsic JJs. Near 45° twist angle, we observe fractional Shapiro steps and Fraunhofer patterns, consistent with the existence of two degenerate Josephson ground states related by time-reversal symmetry (TRS). By programming the JJ current bias sequence, we controllably break TRS to place the JJ into either of the two ground states, realizing reversible Josephson diodes without external magnetic fields. Our results open a path to engineering topological devices at higher temperatures.

     
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    Free, publicly-accessible full text available December 22, 2024
  6. We report the isotropic plasma atomic layer etching (ALE) of aluminum nitride using sequential exposures of SF6 plasma and trimethylaluminum [Al(CH3)3]. ALE was observed at temperatures greater than 200 °C, with a maximum etch rate of 1.9 Å/cycle observed at 300 °C as measured using ex situ ellipsometry. After ALE, the etched surface was found to contain a lower concentration of oxygen compared to the original surface and exhibited a ∼35% decrease in surface roughness. These findings have relevance for applications of AlN in nonlinear photonics and wide bandgap semiconductor devices. 
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    Free, publicly-accessible full text available May 2, 2024
  7. Abstract

    Abiotic stressors can be major sources of selection, resulting in diverse demographic responses operating via multiple direct and indirect mechanisms. However, unusual weather events are notoriously difficult to study due to their spatial and temporal unpredictability. A severe drought affected the Flint Hills of Kansas in 2018, occurring during the ongoing population‐level studies of three species of declining grassland songbirds: Eastern Meadowlarks (Sturnella magna), Grasshopper Sparrows (Ammodramus savannarum), and Dickcissels (Spiza americana). We compared nest survival, nest initiation date, and potential behavioral drivers of reproductive differences (i.e., nest orientation, investment) between the 2018 drought year and 2–6 years of average‐to‐wet years. Nest initiation in the drought year was concentrated early in the season, suggesting that birds did not renest or attempt second broods. The two species that build domed nests shifted the orientation of nest entrances away from early morning sun and toward the direction of prevailing winds in the drought year. Multiple nest‐level metrics of investment and success were similar in drought and nondrought years. These results suggest that demographic changes during droughts can reflect both direct responses and may also involve biotically mediated trophic consequences.

     
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